Multi-study example OSD-37 & OSD-38 & OSD-120 & OSD-321

Counts were normalized using DESeq2

The Plant Analysis Working group made this meta-analysis of seedling development in spaceflight.

GeneLab Visualization Multi-Study

Link to Multi-study visulisation OSD-37 & OSD-38 & OSD-120 & OSD-321

Different factors can be loaded into the model as shown in this table.

OSD	ecotype	genotype	treatment
OSD-37	Col-0,Cvi-0,Ler-0,Ws-2	Wild Type
OSD-38		Wild Type
OSD-120	Col-0,Col-0 PhyD,Wassilewskija ecotype		Dark Treatment,Light Treatment
OSD-321	Col-0	Wild Type,bzip28-2,bzip28-2 bzip60-1,bzip60-2,ire1a-4 ire1b-2

Normalized counts with coloring are based on the OSD accession and thus also define the mission and processing factors.

Unnormalized counts PCA 1 and PCA2

Normalised counts PCA 1 and PCA2

Normalised counts PCA 3 and PCA4

Unnormalised counts PCA 3 and PCA4

Gathering study information and normalization method...

You can return to this page using the following link when its complete:

GeneLab Visualization Multi-Study

DALLE4 transformed the title of GLD-120 "Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight?" into this image.

illustrations that vividly capture the genetic dissection of the Arabidopsis thaliana spaceflight transcriptome, showcasing plants at various growth stages and the advanced genetic engineering tools used to study their adaptation to space. The scenes are set against the backdrop of space to emphasize the extraterrestrial environment where this groundbreaking research is taking place.